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Pura Ulun Danu temple, Bali

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Bali's charm is undeniable. The perfect tropical paradise, it is a land of enchanting mountains, pristine waters, and stunning wildlife. Visiting Bali aboard any of these 19 top small ship cruises for 2025 and 2026 offers the opportunity to experience a magical journey through some of the most beautiful islands of Indonesia. Discover the charm of BaliBenoaBanta IslandMoyo Island, and Menjangan, which will allow you to explore a variety of cultures and enjoy the country's most beautiful and hidden landscapes. You will also have the opportunity to visit ancient temples and villagessnorkel on coral reefs and relax on white sandy beaches. Our 8 to 18 days cruises range from $5,450 to $120,190Come aboard and discover the magic of Indonesia.
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    • Bali
A pair of dragons on Komodo Island
from $9,800
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Indonesia - Bali & Komodo National Park Cruise

Bali to Komodo National Park - 8 Day Itinerary aboard Aqua Blu
  • Experience Pink Beach
  • Observe Komodo dragons
  • Enjoy the view of Sangeang volcano
  • Encounter friendly whale sharks
Starts / Ends
Benoa / Labuan Bajo
Activity Level
Variable
Aqua Blu invites you on this 8-day exploration of Indonesia's beautiful Komodo National Park, from Benoa, Bali to Labuan Bajo. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. You'll also have chances to snorkel in the turquoise blue waters along the way.
Cruise Details
0
Wild Komodo Dragon in its habitat
from $5,450
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Whale Sharks, Corals & Dragons

Komodo-Komodo - 9 Day Itinerary aboard Ombak Putih
  • Visit local communities
  • Snorkel along vibrant coral reefs
  • Enjoy a barbecue on the beach
  • Discover unique species
Starts / Ends
Komodo Island / Melo Village
Activity Level
Variable
Spend nine days snorkeling, encountering wildlife, and exploring tropical islands while cruising along Komodo and back aboard Ombak Putih. Begin your journey on Komodo Island and see the Komodo dragons, snorkel on Komodo Park’s best reefs, swim with manta rays, and more. Then visit Rinca Island, which is known for its diverse wildlife.
Cruise Details
0
Cruising Adventures! Orangutan
from $8,400
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Orangutans and Dragons

Bali-Komodo - 13 Day Itinerary aboard Ombak Putih
  • Visit a Dayak community
  • Learn about orangutans in Borneo
  • Snorkel over vibrant coral reefs
  • Spot Komodo dragons
Starts / Ends
Borneo / Melo Village
Activity Level
Variable
Embark on a 13-day, two-part cruise aboard Ombak Putih and explore the rich wildlife and cultural heritage of Indonesia. Explore Borneo and visit an orangutan conservation center and a local Dayak village. Fly to Bali and set sail to various islands, exploring the highlights of Komodo along the way.
Cruise Details
0
Cruising Adventures! Orangutan
from $8,400
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Orangutans and Dragons

Bali-Komodo - 13 Day Itinerary aboard Katharina
  • Visit a Dayak community
  • Learn about orangutans in Borneo
  • Snorkel over vibrant coral reefs
  • Spot Komodo dragons
Starts / Ends
Bali / Melo Village
Activity Level
Variable
Embark on a 13-day, two-part cruise aboard Katharina and explore the rich wildlife and cultural heritage of Indonesia. Explore Borneo and visit an orangutan conservation center and a local Dayak village. Return to Bali and set sail to various islands, exploring the highlights of Komodo along the way.
Cruise Details
0
Komodo Dragons at Komodo National Park Indonesia
from $8,400
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Orangutans and Dragons

Bali - Komodo - 14 Day Itinerary aboard Katharina
  • Learn about Orangutans in Borneo
  • Visit a Dayak community
  • See volcanoes and Komodo dragons
Starts / Ends
Bali / Melo Village
Activity Level
Variable
Embark on a 14-day, two-part cruise aboard Katharina and explore the rich wildlife and cultural heritage of Indonesia. Explore Borneo and visit an orangutan conservation center and a local Dayak village. Return to Bali and set sail to various islands, exploring the highlights of Komodo along the way.
Cruise Details
0
Mountain Range in Komodo National Park, Indonesia
from $5,450
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Whale Sharks, Corals & Dragons

Komodo-Komodo - 9 Day Itinerary aboard Katharina
  • Visit local communities
  • Snorkel along vibrant coral reefs
  • Enjoy a barbecue on the beach
  • Discover unique species
Starts / Ends
Komodo Island / Melo Village
Activity Level
Variable
Spend nine days snorkeling, encountering wildlife, and exploring tropical islands while cruising along Komodo and back aboard Katharina. Begin your journey on Komodo Island and see the Komodo dragons, snorkel on Komodo Park’s best reefs, swim with manta rays, and more. Then visit Rinca Island, which is known for its diverse wildlife.
Cruise Details
0
Aerial view of Raja Ampat
from $12,195
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Idyllic Raja Ampat & Cenderawasih Bay

Sorong to Sorong - 10 Day Itinerary aboard Greg Mortimer
  • Explore Cenderawasih Bay
  • Immerse in West Papuan culture
  • Experience Pulau Num lagoons
  • Admire Raja Ampat reefs
  • Discover Wayag’s limestone cliffs
  • Birdwatch in Waigeo
Starts / Ends
Denpasar / Sorong
Activities
Festival Visits
Activity Level
Variable
Uncover Indonesia’s Cenderawasih Bay and Raja Ampat on a 10-day cruise aboard the Greg Mortimer. After flying from Denpasar to Sorong, explore pristine islands, snorkel with whale sharks, dive in biodiverse waters, and experience local cultures, including visits to Wayag and Waigeo islands.
Cruise Details
0
Rock formations along the coast of Kimberly
from $8,210
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Immersive Indonesia: Singapore to Australia

15 Day Itinerary aboard Paul Gauguin Cruises
  • Visit Parai Beach and Surabaya
  • Explore Singapore, Bali, and Darwin
  • Discover the man-made \\\\"Supertre
  • See crocodiles Kakadu National Park
Starts / Ends
Singapore / Darwin
Activity Level
Variable
Take a 15-day immersive cruise with Paul Gauguin from Singapore to Australia and explore the wonders of Indonesia. Visit Parai Beach, experience Javanese culture in Surabaya and Semarang, witness the beauty of Bali's rainforests and temples, and encounter Komodo dragons in the national park. Journey to Darwin via Dili, the capital of Timor-Leste.
Cruise Details
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Experience the unique architecture of Asia.
from $9,800
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Indonesia - Bali & Komodo National Park Cruise

Komodo National Park to Bali - 8 Day Itinerary aboard Aqua Blu
  • Experience Pink Beach
  • Observe Komodo dragons
  • Enjoy the view of Sangeang volcano
  • Encounter friendly whale sharks
Starts / Ends
Labuan Bajo / Benoa
Activity Level
Variable
Aqua Blu invites you on this 8-day luxury cruise to Indonesia's beautiful Komodo National Park, from Labuan Bajo to Benoa, Bali. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. Experience the underwater world of this archipelago by snorkeling or diving.
Cruise Details
0
Walk out over the crystal clear waters of Indonesia
from $6,090
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Immersive Indonesia: Singapore to Australia

Singapore to Australia - 14 Day Itinerary aboard Paul Gauguin Cruises
  • Relax on Parai Beach
  • Discover ancient Semarang
  • Experience Bali’s culture
  • See Komodo dragons up close
Starts / Ends
Singapore / Darwin
Activities
Snorkeling, Wildlife Viewing, Village Visits, Spa Relaxation, Archaeological Site Visits, Local Market Visits, Urban Exploration
Activity Level
Variable
Cruise from Singapore to Darwin on a 14-day Paul Gauguin adventure, visiting lively cities, beautiful beaches, and must-see spots like Bali, Komodo Island, and Timor-Leste. Relax onboard with great food, entertainment, and amazing views along the way.
Cruise Details
0
Wajag Island, Raja Ampat
from $15,295
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Living Treasures of Raja Ampat & the Spice Islands

Sorong to Sorong - 13 Day Itinerary aboard Greg Mortimer
  • Visit Wayag Island lagoon
  • Explore Raja Ampat
  • Hike Mount Pindito
  • Discover Banda Neira’s history
Starts / Ends
Denpasar / Sorong
Activity Level
Variable
Arrive in Bali to begin your 13-day journey, then fly to Sorong for embarkation aboard the Greg Mortimer to explore Raja Ampat and the Moluccas. This trip combines adventure and cultural experiences, with opportunities for diving, birdwatching, and visiting remote villages and historical sites.
Cruise Details
0
Orangutans
from $17,895
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In the Wake of Wallace: Indonesia & Borneo

Denpasar - Singapore - 16 Day Itinerary aboard Greg Mortimer
  • Explore Misool’s pristine reefs
  • Discover Buru Island’s villages
  • Snorkel Wakatobi’s coral haven
  • Wander Belitung’s beaches
Starts / Ends
Denpasar / Singapore
Activities
Stand Up Paddle Boarding, Hiking, Kayaking, Scuba Diving, Whale Watching
Activity Level
Variable
Set sail on a 16-day cruise from the Indonesian Archipelago to Singapore aboard the Greg Mortimer, exploring diverse islands like Raja Ampat and Wakatobi National Park. Encounter unique wildlife, immerse in local culture, and witness Indonesia's stunning natural beauty.
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Beautiful wild coast of Raja Ampat, Indonesia
from $14,375
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Indonesian Explorer: Raja Ampat to Papua New Guinea

Bali - Port Moresby - 18 Day Itinerary aboard Heritage Adventurer
  • Visit Raja Ampat
  • Lookout for the endemic birds
  • Explore Komodo National Park
  • Swim at Triton Bay
Starts / Ends
Bali / Cairns
Activity Level
Variable
Aboard Heritage Adventurer on this 18-day expedition cruise to Indonesia's remote and little-known tropical islands, from Raja Ampat to Papua New Guinea, see whale sharks in Triton Bay, visit Komodo National Park, home to the famed Komodo Dragon, and more.
Cruise Details
0
Breathtaking aerial sunset in Komodo National Park in Indonesia
from $11,490
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Voyage to Indonesia: Dragons, Reefs, and the Spice Islands – with Smithsonian Journeys

Benoa, Bali - Darwin - 13 Day Itinerary aboard Le Jacques Cartier
  • See the Coral Triangle’s ecosystems
  • Experience Indonesia's culture
  • See Komodo dragons upclose
  • Island hop around Indonesia
  • Discover Triton Bay and Kei Islands
Starts / Ends
Benoa / Darwin
Activity Level
Variable
This 13-day cruise from Bali to northern Australia explores the Coral Triangle’s rich biodiversity. Discover Indonesia’s cultural heritage from Sumbawa's villages to the historic Spice Islands. Highlights include Komodo National Park’s Komodo dragons, snorkeling around Flores and Alor, and diving in West Papua’s Triton Bay.
Cruise Details
0
from $12,750
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Indonesian Explorer: Bali, Raja Ampat & Papua New Guinea

18 Day Itinerary aboard Heritage Adventurer
  • Visit Raja Ampat
  • Lookout for the endemic birds
  • Explore Pegunungan Nature Reserve
  • Swim at Cenderawasih Marine Park
Starts / Ends
Denpasar / Cairns
Activity Level
Variable
Admire Indonesia's extraordinary diversity during this unique 18-day cruise aboard the Heritage Adventurer, sailing from Manado all the way to Madang with ample opportunities to explore the stunning submarine landscape by snorkeling, kayaking and more!
Cruise Details
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Explore the coral reefs in Indonesia
from $33,990
2-for-1
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Discover Komodo & The Spice Islands

Denpasar - Darwin - 16 Day Itinerary aboard Scenic Eclipse II
  • Discover Moyo Island
  • Experience Komodo Island
  • Explore Larantuka
  • Discover Alor Island
Starts / Ends
Denpasar / Darwin
Activity Level
Variable
Embark on a 16-day cruise from Denpasar to Darwin aboard the Scenic Eclipse II. Trace the paths of intrepid explorers through Indonesia's remote, untouched islands. This once-in-a-lifetime voyage offers incredible wildlife encounters, breathtaking scenery, and captivating cultures.
Cruise Details
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Learn about the history and culture of Sulawesi
from $36,290
2-for-1
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Natural Treasures of Indonesia, Borneo & Taiwan

Denpasar - Taipei - 17 Day Itinerary aboard Scenic Eclipse II
  • Explore Sumbawa Island
  • Discover Komodo Island
  • Experience Taka Bonerate Islands
  • Discover Sulawesi
Starts / Ends
Benoa / Keelung
Activity Level
Variable
Embark on a 17-day cruise from Denpasar to Taipei. Explore Southeast Asia's diverse and captivating destinations, from busy cities to remote islands. With overnight port stays, immersive experiences, and luxurious onboard amenities, Scenic Eclipse II offers a fascinating and indulgent voyage.
Cruise Details
0
Balinese sunset, Indonesia
from $10,450
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Tropical Indonesian Odyssey

Darwin - Benoa, Bali - 13 Day Itinerary aboard Le Jacques Cartier
  • Encounter Komodo legendary dragons
  • Explore Maumere coastal charm
  • Discover Kalabahi rich traditions
  • Visit Kitikiti Waterfall wilderness
Starts / Ends
Darwin / Benoa
Activities
Small Ship Sailing, Rainforest Exploration
Activity Level
Variable
Join this 13-day cruise on the Le Jacques Cartier, exploring Indonesia’s stunning landscapes from Darwin to Bali. Visit pristine beaches, vibrant marine life, and historic Spice Islands, and experience local culture before concluding your adventure in the enchanting ‘Island of the Gods.’
Cruise Details
0
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