Indonesia Tours & Cruises in 2026

from $10,710

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Indonesia Ambon and Spice Islands Cruise

8 Day Itinerary aboard Aqua Blu

• Discover local pottery-making
• Stroll through Dutch Fort Belgica
• Visit old nutmeg plantations
• Watch out for wildlife

Starts / Ends

Ambon Island / Ambon Island

Activity Level

Variable

Discover Ambon and the Spice Islands on an 8-day exploration with Aqua Blu. The journey begins and ends in Ambon where you can have an opportunity to trek and watch birds, and makes stops in some of the most stunning islands of Indonesia including Banda Api, Banda Islands, Banda Neira, Nusa Laut, Run Island, and Saparua Island.

Cruise Details

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from $14,375

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Indonesian Explorer: Raja Ampat to Papua New Guinea

Bali - Port Moresby - 18 Day Itinerary aboard Heritage Adventurer

• Visit Raja Ampat
• Lookout for the endemic birds
• Explore Komodo National Park
• Swim at Triton Bay

Starts / Ends

Bali / Cairns

Activity Level

Variable

Aboard Heritage Adventurer on this 18-day expedition cruise to Indonesia's remote and little-known tropical islands, from Raja Ampat to Papua New Guinea, see whale sharks in Triton Bay, visit Komodo National Park, home to the famed Komodo Dragon, and more.

Cruise Details

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from $8,800

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Orangutans and Dragons

Bali-Komodo - 13 Day Itinerary aboard Katharina

• Visit a Dayak community
• Learn about orangutans in Borneo
• Snorkel over vibrant coral reefs
• Spot Komodo dragons

Starts / Ends

Bali / Melo Village

Activity Level

Variable

Embark on a 13-day, two-part cruise aboard Katharina and explore the rich wildlife and cultural heritage of Indonesia. Explore Borneo and visit an orangutan conservation center and a local Dayak village. Return to Bali and set sail to various islands, exploring the highlights of Komodo along the way.

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from $10,710

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Indonesia - Bali & Komodo National Park Cruise

Komodo National Park to Bali - 8 Day Itinerary aboard Aqua Blu

• Experience Pink Beach
• Observe Komodo dragons
• Enjoy the view of Sangeang volcano
• Encounter friendly whale sharks

Starts / Ends

Labuan Bajo / Benoa

Activity Level

Variable

Aqua Blu invites you on this 8-day luxury cruise to Indonesia's beautiful Komodo National Park, from Labuan Bajo to Benoa, Bali. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. Experience the underwater world of this archipelago by snorkeling or diving.

Cruise Details

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from $10,710

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Indonesia Raja Ampat Cruise

8 Day Itinerary aboard Aqua Blu

• Visit a local village and bat cave
• Wander the coastline of Cape Kri
• Explore the Pulau Wayag’s islets
• Tour on a pearl farm in Aljui Bay

Starts / Ends

Sorong / Sorong

Activity Level

Variable

Discover the islands of Raja Ampat in Indonesia on this 8-day cruise with luxurious Aqua Blu. Look out for unique wildlife and enjoy relaxing landscapes on this amazing journey through some of the most pristine islands of Indonesia.

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from $11,150

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SeaTrek With Rare Species, Remote Cultures & Remarkable Corals

Ternate - Bitung - 14 Day Itinerary aboard Ombak Putih

• Snorkel Guraici's vibrant reefs
• Discover Bacan’s unique wildlife
• Explore Obi Latu plantations
• Encounter rare Maleo birds

Starts / Ends

Ternate Island / Bitung

Activity Level

Variable

Join this 14-day cruise from Ternate to Bitung aboard the Ombak Putih. Sail past volcanoes, snorkel vibrant reefs, visit remote islands, swim with stingless jellyfish, and encounter whale sharks.

Cruise Details

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from $10,050

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In Search of Wallace and His Living Treasures with Dr. George Beccaloni

Ternate - Sorong - 12 Day Itinerary aboard Ombak Putih

• Explore beautiful Ternate
• Admire unique volcanic islands
• Discover Bacan Island's wildlife
• View Yar Island's flying foxes

Starts / Ends

Ternate Island / Sorong

Activity Level

Variable

This 12-day itinerary honors Alfred Russel Wallace’s observations of zoological differences across a narrow strait in the archipelago, proposing the Wallace Line, which separates the ecozones of Asia and Australia, in collaboration with Dr. George Beccaloni and Fauna & Flora International.

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from $11,490

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Voyage to Indonesia: Dragons, Reefs, and the Spice Islands – with Smithsonian Journeys

Benoa, Bali - Darwin - 13 Day Itinerary aboard Le Jacques Cartier

• See the Coral Triangle’s ecosystems
• Experience Indonesia's culture
• See Komodo dragons upclose
• Island hop around Indonesia
• Discover Triton Bay and Kei Islands

Starts / Ends

Benoa / Darwin

Activity Level

Variable

This 13-day cruise from Bali to northern Australia explores the Coral Triangle’s rich biodiversity. Discover Indonesia’s cultural heritage from Sumbawa's villages to the historic Spice Islands. Highlights include Komodo National Park’s Komodo dragons, snorkeling around Flores and Alor, and diving in West Papua’s Triton Bay.

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from $10,400

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The Wonders of North Maluku: A Snorkelling, Wildlife & Cultural Adventure

Ternate - Ternate - 13 Day Itinerary aboard Katharina

• Discover Makian Island landscapes
• Explore Halmahera's local culture
• Encounter wildlife in Bacan Island
• Discover Ternate’s landmarks

Starts / Ends

Ternate Island / Ternate Island

Activity Level

Variable

Embark on a 13-day cruise aboard the Katharina. Explore North Maluku's islands, forests, and reefs, featuring cultural experiences, wildlife encounters, and snorkeling on pristine beaches.

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from $8,100

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Papua's Whale Sharks and Birds of Paradise

Sorong - Kaimana - 10 Day Itinerary aboard Ombak Putih

• Swim under Kitikiti waterfall
• Explore the maze of karst islands
• View birds of paradise in nature
• Enjoy the isolated Ceram Sea

Starts / Ends

Sorong / Triton Bay

Activity Level

Variable

Take a cruise from Sorong to Kaimana in discovering Papua's whale sharks and different bird-of-paradise species aboard the Ombak Putih ship on this 10-day voyage. Visit Dampier Strait, Misool Archipelago, Mainland of Papua, Triton Bay, and Namatote Passage.

Cruise Details

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from $1,596

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Sanur Beach Retreat

4-6 Day Itinerary

• Relax in the beach town of Sanur
• Explore local homes and workshops
• Take a stand-up paddleboard lesson
• Enjoy a Balinese massage

Activities

Spa Relaxation

Activity Level

Relaxed

Enjoy a resort stay on the beautiful and relaxed Sanur Beach on the eastern side of the Bukit Peninsula in Bali. This old beach resort town has a more relaxed feel and offers a great oasis for a beach vacation in Bali. Enjoy 4 nights at Griya Santrian resort, visit Ubud, and try stand up paddleboarding at Jimbaran Beach to top off your Bali tour.

Tour Details

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from $6,350

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SeaTrek the Remote Ring of Fire: East of Komodo

Komodo-Alor - 10 Day Itinerary aboard Katharina

• Witness fruit bat skies
• Encounter wild Komodo dragons
• Climb for panoramic views
• Experience local weaving crafts
• Visit historic Portuguese fort

Starts / Ends

Labuan Bajo / Maumere

Activities

Village Visits, Stand Up Paddle Boarding, Kayaking, Wildlife Viewing, Snorkeling

Activity Level

Variable

Start your trip in Bali, flying to Labuan Bajo for a 10-day exploration of Komodo National Park and beyond aboard the Katharina. See Komodo dragons, snorkel with turtles, visit villages, and experience local landscapes and culture.

Cruise Details

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from $12,700

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SeaTrek from the Spice Islands to the Dragon Islands (Ternate-Komodo)

Ternate to Komodo - 16 Day Itinerary aboard Ombak Putih

• Explore Tidore’s cloves and volcano
• Snorkel Guarici’s vibrant reefs
• Discover Bacan’s unique wildlife
• Witness Taliabu’s war dance
• Explore Banggai local markets
• Drift with majestic manta rays
• See iconic Komodo dragons

Starts / Ends

Ternate Island / Labuan Bajo

Activities

Hiking

Activity Level

Variable

Embark on a 16-day cruise aboard Ombak Putih, exploring Indonesia’s culture, wildlife, and marine beauty. Highlights include historical Ternate, vibrant reefs, Bajau sea nomads, and Komodo dragons, with hikes and village visits.

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from $15,175

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Asian Island Odyssey: Cruising the Remote Islands of the Philippines & Indonesia, Taipei to Darwin

19 Day Itinerary aboard Heritage Adventurer

• Visit Yehliu Geopark
• Marvel at Tojoman Lagoo
• Explore Fort Belgica
• Swim with Whale Sharks

Starts / Ends

Taipei / Darwin

Activities

Whale Watching, Local Market Visits

Activity Level

Variable

Join this 19-day Asian Island Odyssey, cruising from Taipei to Darwin aboard Heritage Adventurer. Traverse the Tropic of Cancer and the Equator. Explore islands with blue waters, pristine coral gardens, and intriguing wildlife. Highlights include Taiwan’s Yehliu Geopark and Taroko National Park, swimming with Whale Sharks, and more.

Cruise Details

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from $8,100

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Papua's Whale Sharks and Birds of Paradise

Kaimana to Sorong - 10 Day Itinerary aboard Katharina

• Explore Triton Bay
• Snorkel and kayak vibrant waters
• Swim under the Kitikiti waterfall
• Visit Tomolol’s mysterious cave

Starts / Ends

Misool / Sorong

Activity Level

Variable

This 10-day South Pacific cruise aboard Katharina honors naturalist Alfred Russel Wallace, the co-founder of the theory of evolution. This magnificent tour takes you on land and sea to discover what captivated Wallace about this region of the world, especially the magnificent birds of paradise.

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from $8,100

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The Jewels of Raja Ampat

10 Day Itinerary aboard Ombak Putih

• Discover the Misool archipelago
• Explore Tomolol’s dome-topped cave
• Spot the red bird of paradise
• Admire Raja Ampat’s beauty

Activity Level

Variable

Join the Ombak Putih on this exceptional 10-day cruise of Indonesia and explore Raja Ampat. Kayaking and snorkeling are highlights of this itinerary, along with cultural visits to local villages that give you insights into the local way of life, customs, and traditions of life in this region of the world.

Cruise Details

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from $1,748

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Magical Bali

8 Day Itinerary

• Visit the cultural hub of Ubud
• Experience market food
• Hike through rice fields
• Wander Sanur beach town

Activity Level

Relaxed

Journey into the ancient temples of Ubud, hike along the stunning country landscapes characterized by rice terraces, and explore the famous beach town of Sanur with a private, English-speaking guide on this 8-day tour.

Tour Details

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from $8,800

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Orangutans and Dragons

Bali - Komodo - 14 Day Itinerary aboard Ombak Putih

• Learn about Orangutans in Borneo
• Visit a Dayak community
• See volcanoes and Komodo dragons

Starts / Ends

Bali / Melo Village

Activity Level

Variable

Embark on a 14-day, two-part cruise aboard Ombak Putih and explore the rich wildlife and cultural heritage of Indonesia. Explore Borneo and visit an orangutan conservation center and a local Dayak village. Return to Bali and set sail to various islands, exploring the highlights of Komodo along the way.

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